Browse of TCMCG051C16338 protein

CDS

Accession Number	TCMCG051C16338
gbkey	CDS
Protein Id	XP_002307067.1
Location	complement(join(5144826..5146039,5146991..5150117,5150686..5151576))
Gene	LOC7455185
GeneID	7455185
Organism	Populus trichocarpa

Protein

Length	1743aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA17973
db_source	XM_002307031.3
Definition	ATP-dependent RNA helicase DEAH12, chloroplastic isoform X1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category	A
Description	Helicase associated domain (HA2) Add an annotation
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03041        [VIEW IN KEGG]
KEGG_ko	ko:K12818        [VIEW IN KEGG]
EC	3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway	ko03040        [VIEW IN KEGG] map03040        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0003676        [VIEW IN EMBL-EBI] GO:0003723        [VIEW IN EMBL-EBI] GO:0003724        [VIEW IN EMBL-EBI] GO:0003824        [VIEW IN EMBL-EBI] GO:0004004        [VIEW IN EMBL-EBI] GO:0004386        [VIEW IN EMBL-EBI] GO:0005488        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0005737        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006396        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0008026        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0008186        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010467        [VIEW IN EMBL-EBI] GO:0016070        [VIEW IN EMBL-EBI] GO:0016462        [VIEW IN EMBL-EBI] GO:0016787        [VIEW IN EMBL-EBI] GO:0016817        [VIEW IN EMBL-EBI] GO:0016818        [VIEW IN EMBL-EBI] GO:0016887        [VIEW IN EMBL-EBI] GO:0017111        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0042623        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI] GO:0070035        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:0097159        [VIEW IN EMBL-EBI] GO:0140098        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1901363        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGAGAAAGTCATCTTTTCACCGCACCACTACCCGGCGCAACCCATCTCCACCCCGCCACCACCGTCCTCCCCTCACCACCAACAACAACAACAACAATTTTCCCACAACAAGAAACGCCCGTAGGACTTCCCCTAACTTCATAATCCACCTTCACCTGGACCCCACGCTCGCACCTTCCAACAAAAGACCAGACCCCAACACTGTAAACTCTGTAATCTCCCAATGCAACCCAACACCACCACCTGACCGTATCATATTACCGACAACCACTACCACCAAGACAAAACTAACTGCTTCCTTGCATTTTCAGGAATGGTCCCACACGCTGAATTTTATGACAACCTTATGGGAACTCCGTCTTCGGGGAGCCCACAGTTTCAGTCCAAAGCTGCAATCATACATCCTCTTACCTTCTGATACCGAGGAGTTGAAAAGGAATTTAACGAAGAAGTTTAGTGATTATCTTAAAGGACTCATTAAGGGTGTGGGTAGTAATGTTAATGATGATGAAAATGTGGTTGGGAGATGGCAGGCGAAAGTGAGTGAAAAAAGCGATGAGATTGCGCAGTTGATGAAGTTGCTTAAGGGGAGGAATAGAATGATGGGTTTTAGTGAGTTGAATGAGAGGAAAAAAGGGTTGATGGCGGAAAGGGACTTGATCGTGAAGAGATTGGAGGAATTTAGGGCTTCCATGAAGTGTATTTTGAAGTATATTGAAGGAGGAAGGGAGGAGGAAGGGGAAAGGGGTTTAGAAGTGTTTGTGTTTGATGGGGAGATTGATTGGGAAAGGATTCATAGATTGGTTTTGAGGGAAATTAGGAGGTTGGTTGATGGGTTGCCTATTTATGCTTATAGGCAGCAGATTTTGGAGAAGATTCACAGCAAGCAGGTAATGGTTTTGGTTGGGGAGACTGGTTCGGGGAAGAGTACACAGTTGGTTCAATTCCTTACTGATTCAGGAATACCTGGCAAGGAGTCCATTGTATGTACTCAGCCACGCAAGATTGCAGCCATCTCACTTGCTGATAGAGTCAATGAAGAAAGTAGGGGGTGCTATGAAAATAGTTCAGTCGTGAGTTATCCAACATTTTCATCTGCACAGCAGTTTGGTTCCAAAGTCATATTCATGACTGACCACTGTTTACTGCAGCACTACATGAATGATACCACTTTGTCTGGGATATCATGCATCATTGTTGATGAGGCTCATGAAAGAAGCTTGAACACTGATCTTCTTTTGGCATTGATTAGAGGCTTACTTTGTGAGAGACCTGATTTAAGGCTAGTGATAATGTCAGCAACAGCTGATGCAAAGCAGCTGTCAGATTATTTTTATGGTTGTGAAATCTTTCATGTTGAGGGAAGAAACTTTCCAGTAGAAGTCAGATACACTCCTTCCTCTGAGGAAACTGCTTCTGGTATTGTTTCTCCATATGTATATGACACTTTGAGGATAACGACAGAGATTCATAAACAGGAGAGTGAAGGCACCATTCTTGCCTTTTTGACTTCTCAGATGGAAGTAGAATGGGCTTGTGAGAAATTTGATGCTGCCTCTGCTGTTGCATTAGCCTTGCATGGAAAGCTTCCTTTCGAAGAGCAATCTCGTGTTTTCCAAGATTTTGATGGGAAAAGAAAAGTTATATTTGCCACTAATCTCGCAGAGACATCACTTACAATTCCTGGGGTCAAGTATGTGGTTGACTCTGGCTTGGCCAAAGAGAGTAAGTTTGAAGCAGCTACGGGCATGAATGTGCTTAGAGTGTGCAGGATCAGCCAGAGTTCTGCTAAACAGAGAGCTGGTCGTGCTGGGAGAACGGTACCTGGAATATGCTATAGACTCTACACAGAATCTGACTTTGAGTCGATGTCTCCCAATCAAGAACCTGAGATTCGCAGAGTTCATCTTGGTGTTGCTGTTCTGAGGATGCTTGCTTTGGGAATTAAGAATGTACAGGAGTTTGATTTTGTTGATGCACCTAGCACCAAAGCAATTGATATGGCCATTAGGAATCTTGTTCAGTTAGGTGCCATTACACTGAAAGGTGGCATCTGTGAACTAACTGAGGAAGGTCGCTACATGGTTAAAATGGGCATTGAGCCTCGGCTCGGTAAGATCATTATCAGCAGCTTTCATTATCGCTTAGGTAAGGAGGGCCTTGTTCTTGCTGCTGTAATGGCAAATGCCAGTAGCATATTTTGCAGAGTTGGTAGTCAGGATGATAAGCAAAAGGCTGATTGTCTTAAGGTGCAGTTTTGCCATCGCAGTGGTGACCTCTTTACTGTGCTCTCTGTGTACAAAGAGTGGGAGGCTTTGCCTCAAGACAGGAGAAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCATGAGGAGATGCCAAGACACGGTCAAGGAATTGGAATTTTGCCTTGAAAAGGAACTCACTGTTATTATTCCGTCATATTGGAATTGGAATCCTAATAAGTCTACCGAGCATGATAAATATTTGAAAAAGATAATACTCTCAGCCCTTGCAGAAAATGTAGCCATGCACTCTGGACACGATCGACTTGGTTATGAAGTGGCATTGACCGGGCAGCACATTCAGCTGCATCCTTCATGTTCGCTGCTAGTATTTGGTGAAAAACCAAATTGGGTTGTCTTTGGTGAACTCCTCTCAATATCTAATGATTATTTGGTTTGTGTAACTGCTTTTGACTTTGAATCATTGTCTACGCTTTGCCCCCCTCCCTTGTTTGATGCCCTTAAGATGGAAAGCCAGAAGTTGCAAGTGAAGGTGTTGACCAGTTTTGGCAGTTCCCTGCTCAAAAGGTTTTGTGGTAAATCTAACAGCAATCTGCAGTCTCTTGTAACTTGTGTTCGGATTGCCTGTATGGATGAAAGGATTGGTGTTGAGGTACATGTTGATCAGAATGAAATTCTGTTATTTGCAACAGCAGAGGACATGCAGAAGGTGTCCAGCCTTGTAAGTGAAGCTTTGGAGTGTGAGCGAAAATGGTTGCATAATGAATGCATGGAGAAATTTTTGTATCTTGGAGCTGATTTGTCACCCATGGCACTTTTTGGAGCAGGAGCTGAGATTAAGTATTTGGAACTAGAAAAGAGATGTTTGACTGTCAATGTATTTTTTTCTAATGCAAATACAATTGATGATAAGGAGGTTTTGATGTTTCTTGAGGAATATACATCTGGTACTGTTTGTTCTGTTCACAAGTCTGTCGGAAGTGGACAAGAGGGTGATGAGAAGGAAAAGTGGGGCCAAATAACATTTCTCTCTCCTGATTCTGCCAGAAAAGCTGCCCAGCTGAATGAAGTTGAATTCAAAGGCTCCAAGCTGAAGGTAGTTCCATCACAAACAATCATTGGAGGCAATCACAAAATGTTTTCATTTCCTGCTGTTAAAGCAAAAATTGTTTGGCCTCGTAAAGTCAGTAAGGGGCTTGCCATTGTCAAATGTTATGTTCATGATGTTGATTTCATGATTTGTGATTTCTCTAACCTGGAAATTGGAGGAAGGTATGTTCGGTGTTCAGCTGGTAGGTGTGTGGACTCGATTGTTGTCAGTGGATTTAGTAAAGAACTTTCTGAAGCTGATATTTTACGTGCATTGAGGAGTGCCACAAACAGGAGAATCCTAGATTTCTTCATAGTAAGGGGAGACGCTGTTGAAAATCCTCCATTGGGTGCTTGTGAAAAAGCACTTTTAAGAGAGATATCCCCCTTTATGCCTAAAAGGAATCCCCAAACTAGCTGCTGCAGAGTCCAAGTCTTTCCACCTGAATTAAAGGATGCTTTTATGAAGGCTTTCATTACCTTTGATGGAAGATTGCACTTGGAAGCAGCAAGAGCTTTAGAGCATATGGAAGGGAAAGTATTACCTGGGTGCCATTCATGGCAGAAAATTAAGTGCGAGCAGATGTTTCATAGCTTGATATCCTGCTCAGCTAGTATCTATGTTGCAATCAAGAAGCAACTGGATTCTTTGCTTGCAAGCTTCAGTCGTGTAAAGGGTGCAGAATGCAGTCTAGACAGGAATGAAAATGGTTCCTATCGAGTGAAAATATCTGCTAATGCTACAAAAACTGTTGCAGAGCTAAGAAGACCTCTGGAAGAGCTTATGAGAGGACAGACCATAAACCATCCAAGCCTCACTCCAACTATTCTACAGCATCTGTTCTCTGGTCAAGGTATCAATCTGATGAAGTCAATACAGAGAGAGACCGGTACCTACATTCACTTTGACAGGCGCAACTTCAATCTTAAGATTTTTGGTCGTCCAGACAAGATTGCTCCAGCGCAGCAGAAATTTATTCAATTACTTCTGGCCAATCATGAAAGCAAGCAACTCGAGATCCACCTCAGAGGTGGAGATCTGCCCCCAGACTTGATGAAGGAAGTAGTTAAGAGGTTTGGGCCAGATCTTCATGGTCTCAAAGAGAAGGTACCTGGGGCAGATCTTACACTTAGCACCCGTCACCATGTTATCTCTGTTCATGGTGACAAAGAACTAAAGCAAAACGTGGAAGAAATAATTTTTGAGATGGCGCAAATGGGTTATGATTCAGCTGAGAGGCTTGATGGTGGAGATGCCTGCCCTGTTTGTTTGTGTGAAGTTGAGGATGCTTACCGGCTTGAAAGCTGCGGGCATTTGTTTTGTCGAATGTGCTTGGTGGAGCAACTTGAATCAGCATTGAAAAACTTGGATAGTTTCCCAATATGCTGCGCCCATGGGAGCTGCAGGGCTCCCATATTGCTGACAGACTTGAGGTCTCTCTTGTCGAGTGACAAGTTAGAGGAACTCTTTAGGGCTTCTTTGGGGTCATTTGTAGCATCAAGTGGGGGAACCTACCGGTTTTGCCCATCTCCTGACTGCCCTTCAGTTTATAGAGTTGCTGATCCTGTCACAGGTGGTGACCCATTTGTCTGCGGGGCTTGTTTTGCGGAGACTTGTACCAGGTGCCACTTGGATTATCATCCATACCTCTCGTGTAAGAAATACATGGAGTTCAAGGAAGATCCTGATTTATCACTAAAGGACTGGTGCAAAGGAAAAGAGAATGTGAAAAGCTGTCCTGTCTGTGGATATACAATCGAGAAAGGGGAAGGTTGCAACCATGTCGAGTGCAAGTGCGGCGGGCATGTCTGCTGGGTCTGTCTAGAGTCTTATAATAACAGCGAGGACTGCTATAACCATTTGAGGTCAATGCACGGGGGCATAGCTTGA

Protein:   MRKSSFHRTTTRRNPSPPRHHRPPLTTNNNNNNFPTTRNARRTSPNFIIHLHLDPTLAPSNKRPDPNTVNSVISQCNPTPPPDRIILPTTTTTKTKLTASLHFQEWSHTLNFMTTLWELRLRGAHSFSPKLQSYILLPSDTEELKRNLTKKFSDYLKGLIKGVGSNVNDDENVVGRWQAKVSEKSDEIAQLMKLLKGRNRMMGFSELNERKKGLMAERDLIVKRLEEFRASMKCILKYIEGGREEEGERGLEVFVFDGEIDWERIHRLVLREIRRLVDGLPIYAYRQQILEKIHSKQVMVLVGETGSGKSTQLVQFLTDSGIPGKESIVCTQPRKIAAISLADRVNEESRGCYENSSVVSYPTFSSAQQFGSKVIFMTDHCLLQHYMNDTTLSGISCIIVDEAHERSLNTDLLLALIRGLLCERPDLRLVIMSATADAKQLSDYFYGCEIFHVEGRNFPVEVRYTPSSEETASGIVSPYVYDTLRITTEIHKQESEGTILAFLTSQMEVEWACEKFDAASAVALALHGKLPFEEQSRVFQDFDGKRKVIFATNLAETSLTIPGVKYVVDSGLAKESKFEAATGMNVLRVCRISQSSAKQRAGRAGRTVPGICYRLYTESDFESMSPNQEPEIRRVHLGVAVLRMLALGIKNVQEFDFVDAPSTKAIDMAIRNLVQLGAITLKGGICELTEEGRYMVKMGIEPRLGKIIISSFHYRLGKEGLVLAAVMANASSIFCRVGSQDDKQKADCLKVQFCHRSGDLFTVLSVYKEWEALPQDRRNKWCWENSINAKSMRRCQDTVKELEFCLEKELTVIIPSYWNWNPNKSTEHDKYLKKIILSALAENVAMHSGHDRLGYEVALTGQHIQLHPSCSLLVFGEKPNWVVFGELLSISNDYLVCVTAFDFESLSTLCPPPLFDALKMESQKLQVKVLTSFGSSLLKRFCGKSNSNLQSLVTCVRIACMDERIGVEVHVDQNEILLFATAEDMQKVSSLVSEALECERKWLHNECMEKFLYLGADLSPMALFGAGAEIKYLELEKRCLTVNVFFSNANTIDDKEVLMFLEEYTSGTVCSVHKSVGSGQEGDEKEKWGQITFLSPDSARKAAQLNEVEFKGSKLKVVPSQTIIGGNHKMFSFPAVKAKIVWPRKVSKGLAIVKCYVHDVDFMICDFSNLEIGGRYVRCSAGRCVDSIVVSGFSKELSEADILRALRSATNRRILDFFIVRGDAVENPPLGACEKALLREISPFMPKRNPQTSCCRVQVFPPELKDAFMKAFITFDGRLHLEAARALEHMEGKVLPGCHSWQKIKCEQMFHSLISCSASIYVAIKKQLDSLLASFSRVKGAECSLDRNENGSYRVKISANATKTVAELRRPLEELMRGQTINHPSLTPTILQHLFSGQGINLMKSIQRETGTYIHFDRRNFNLKIFGRPDKIAPAQQKFIQLLLANHESKQLEIHLRGGDLPPDLMKEVVKRFGPDLHGLKEKVPGADLTLSTRHHVISVHGDKELKQNVEEIIFEMAQMGYDSAERLDGGDACPVCLCEVEDAYRLESCGHLFCRMCLVEQLESALKNLDSFPICCAHGSCRAPILLTDLRSLLSSDKLEELFRASLGSFVASSGGTYRFCPSPDCPSVYRVADPVTGGDPFVCGACFAETCTRCHLDYHPYLSCKKYMEFKEDPDLSLKDWCKGKENVKSCPVCGYTIEKGEGCNHVECKCGGHVCWVCLESYNNSEDCYNHLRSMHGGIA